Characterization of Escherichia coli isolated from calf diarrhea in and around Kombolcha, South Wollo, Amhara Region, Ethiopia
Identifieur interne : 001103 ( Main/Exploration ); précédent : 001102; suivant : 001104Characterization of Escherichia coli isolated from calf diarrhea in and around Kombolcha, South Wollo, Amhara Region, Ethiopia
Auteurs : Ashenafi Gebregiorgis [Éthiopie] ; Tesfaye Sisay Tessema [Éthiopie]Source :
- Tropical Animal Health and Production [ 0049-4747 ] ; 2015.
Abstract
This study was carried out from October 2012 to end of February 2013 in and around Kombolcha, Amhara regional state, Ethiopia, using a total of 201 neonatal calves aged 1 day to 4 months and suffering from diarrhea. The objectives of the study were to isolate
Url:
DOI: 10.1007/s11250-015-0946-9
PubMed: 26563273
PubMed Central: 7089229
Affiliations:
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: 000344
- to stream Pmc, to step Curation: 000344
- to stream Pmc, to step Checkpoint: 000586
- to stream Ncbi, to step Merge: 000569
- to stream Ncbi, to step Curation: 000569
- to stream Ncbi, to step Checkpoint: 000569
- to stream Main, to step Merge: 001105
- to stream Main, to step Curation: 001103
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Characterization of <italic>Escherichia coli</italic> isolated from calf diarrhea in and around Kombolcha, South Wollo, Amhara Region, Ethiopia</title><author><name sortKey="Gebregiorgis, Ashenafi" sort="Gebregiorgis, Ashenafi" uniqKey="Gebregiorgis A" first="Ashenafi" last="Gebregiorgis">Ashenafi Gebregiorgis</name><affiliation wicri:level="1"><nlm:aff id="Aff1">Semera Regional Veterinary Diagnostic Laboratory, Semera, Ethiopia</nlm:aff><country xml:lang="fr">Éthiopie</country><wicri:regionArea>Semera Regional Veterinary Diagnostic Laboratory, Semera</wicri:regionArea><wicri:noRegion>Semera</wicri:noRegion></affiliation></author><author><name sortKey="Tessema, Tesfaye Sisay" sort="Tessema, Tesfaye Sisay" uniqKey="Tessema T" first="Tesfaye Sisay" last="Tessema">Tesfaye Sisay Tessema</name><affiliation wicri:level="1"><nlm:aff id="Aff2"><institution-wrap><institution-id institution-id-type="GRID">grid.7123.7</institution-id><institution-id institution-id-type="ISNI">0000000112505688</institution-id><institution>Institute of Biotechnology,</institution><institution>Addis Ababa University,</institution></institution-wrap>Addis Ababa, Ethiopia</nlm:aff><country xml:lang="fr">Éthiopie</country><wicri:regionArea>Addis Ababa</wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">26563273</idno><idno type="pmc">7089229</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7089229</idno><idno type="RBID">PMC:7089229</idno><idno type="doi">10.1007/s11250-015-0946-9</idno><date when="2015">2015</date><idno type="wicri:Area/Pmc/Corpus">000344</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000344</idno><idno type="wicri:Area/Pmc/Curation">000344</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000344</idno><idno type="wicri:Area/Pmc/Checkpoint">000586</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000586</idno><idno type="wicri:Area/Ncbi/Merge">000569</idno><idno type="wicri:Area/Ncbi/Curation">000569</idno><idno type="wicri:Area/Ncbi/Checkpoint">000569</idno><idno type="wicri:Area/Main/Merge">001105</idno><idno type="wicri:Area/Main/Curation">001103</idno><idno type="wicri:Area/Main/Exploration">001103</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Characterization of <italic>Escherichia coli</italic> isolated from calf diarrhea in and around Kombolcha, South Wollo, Amhara Region, Ethiopia</title><author><name sortKey="Gebregiorgis, Ashenafi" sort="Gebregiorgis, Ashenafi" uniqKey="Gebregiorgis A" first="Ashenafi" last="Gebregiorgis">Ashenafi Gebregiorgis</name><affiliation wicri:level="1"><nlm:aff id="Aff1">Semera Regional Veterinary Diagnostic Laboratory, Semera, Ethiopia</nlm:aff><country xml:lang="fr">Éthiopie</country><wicri:regionArea>Semera Regional Veterinary Diagnostic Laboratory, Semera</wicri:regionArea><wicri:noRegion>Semera</wicri:noRegion></affiliation></author><author><name sortKey="Tessema, Tesfaye Sisay" sort="Tessema, Tesfaye Sisay" uniqKey="Tessema T" first="Tesfaye Sisay" last="Tessema">Tesfaye Sisay Tessema</name><affiliation wicri:level="1"><nlm:aff id="Aff2"><institution-wrap><institution-id institution-id-type="GRID">grid.7123.7</institution-id><institution-id institution-id-type="ISNI">0000000112505688</institution-id><institution>Institute of Biotechnology,</institution><institution>Addis Ababa University,</institution></institution-wrap>Addis Ababa, Ethiopia</nlm:aff><country xml:lang="fr">Éthiopie</country><wicri:regionArea>Addis Ababa</wicri:regionArea></affiliation></author></analytic><series><title level="j">Tropical Animal Health and Production</title><idno type="ISSN">0049-4747</idno><idno type="eISSN">1573-7438</idno><imprint><date when="2015">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p id="Par1">This study was carried out from October 2012 to end of February 2013 in and around Kombolcha, Amhara regional state, Ethiopia, using a total of 201 neonatal calves aged 1 day to 4 months and suffering from diarrhea. The objectives of the study were to isolate <italic>Escherichia coli</italic> from diarrheic calves, and to determine <italic>E. coli</italic> biotypes and risk factors associated with its isolation. The fecal samples were collected, transported, and processed following standard microbiological procedures. Seventy-four isolates of <italic>E. coli</italic> were identified. Yellowish diarrhea, younger age, and low-colostrum feeding were significantly associated with rate of <italic>E. coli</italic> isolation (<italic>P</italic> < 0.05). Then the 74 isolates of <italic>E. coli</italic> were biotyped using fermentation of 9 sugars and grouped into 12 biotypes; the most dominant was biotype III (36.8 %). Finally, by comparing with studies elsewhere, from the 12 isolated biotypes, 3 of them were suggested to be enteropathogenic <italic>E. coli</italic> (EPEC), entherotoxigenic <italic>E. coli</italic> (ETEC), and adhesion and effacing <italic>E.</italic> coli (AEEC) pathogenic strains. The present study showed that <italic>E. coli</italic> accounted for 37 % of calf diarrhea, with very diverse biotypes.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Acha, S" uniqKey="Acha S">S Achá</name></author><author><name sortKey="Kuhn, I" uniqKey="Kuhn I">I Kühn</name></author><author><name sortKey="Jonsson, P" uniqKey="Jonsson P">P Jonsson</name></author><author><name sortKey="Mbazima, G" uniqKey="Mbazima G">G Mbazima</name></author><author><name sortKey="Katouli, M" uniqKey="Katouli M">M Katouli</name></author><author><name sortKey="Mollby, R" uniqKey="Mollby R">R Möllby</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Union, A" uniqKey="Union A">A Union</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Aklilu, M" uniqKey="Aklilu M">M Aklilu</name></author><author><name sortKey="Sisay, T" uniqKey="Sisay T">T Sisay</name></author><author><name sortKey="Tefera, T" uniqKey="Tefera T">T Tefera</name></author><author><name sortKey="Tekalign, B" uniqKey="Tekalign B">B Tekalign</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Amoki, Ot" uniqKey="Amoki O">OT Amoki</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ata, Ns" uniqKey="Ata N">NS Ata</name></author><author><name sortKey="Dorgham, Sm" uniqKey="Dorgham S">SM Dorgham</name></author><author><name sortKey="Khairy, Ea" uniqKey="Khairy E">EA Khairy</name></author><author><name sortKey="Zaki, Ms" uniqKey="Zaki M">MS Zaki</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bartels, Cj" uniqKey="Bartels C">CJ Bartels</name></author><author><name sortKey="Holzhauer, M" uniqKey="Holzhauer M">M Holzhauer</name></author><author><name sortKey="Jorritsma, R" uniqKey="Jorritsma R">R Jorritsma</name></author><author><name sortKey="Swart, Wa" uniqKey="Swart W">WA Swart</name></author><author><name sortKey="Lam, Tj" uniqKey="Lam T">TJ Lam</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bekele, M" uniqKey="Bekele M">M Bekele</name></author><author><name sortKey="Abudba, Y" uniqKey="Abudba Y">Y Abudba</name></author><author><name sortKey="Alemayehu, R" uniqKey="Alemayehu R">R Alemayehu</name></author><author><name sortKey="Fufa, A" uniqKey="Fufa A">A Fufa</name></author><author><name sortKey="Kassahun, A" uniqKey="Kassahun A">A Kassahun</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Blanchard, Pc" uniqKey="Blanchard P">PC Blanchard</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Camguilhem, R" uniqKey="Camguilhem R">R Camguilhem</name></author><author><name sortKey="Lebas, F" uniqKey="Lebas F">F Lebas</name></author><author><name sortKey="Labie, C" uniqKey="Labie C">C Labie</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Chattopadhyay, Uk" uniqKey="Chattopadhyay U">UK Chattopadhyay</name></author><author><name sortKey="Gupta, S" uniqKey="Gupta S">S Gupta</name></author><author><name sortKey="Dutta, S" uniqKey="Dutta S">S Dutta</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Chen, Hd" uniqKey="Chen H">HD Chen</name></author><author><name sortKey="Franke, G" uniqKey="Franke G">G Franke</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Cho, Y" uniqKey="Cho Y">Y Cho</name></author><author><name sortKey="Yoon, Kj" uniqKey="Yoon K">KJ Yoon</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Darsema, G" uniqKey="Darsema G">G Darsema</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Foster, Dm" uniqKey="Foster D">DM Foster</name></author><author><name sortKey="Smith, Gw" uniqKey="Smith G">GW Smith</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Meganck, V" uniqKey="Meganck V">V Meganck</name></author><author><name sortKey="Hoflack, G" uniqKey="Hoflack G">G Hoflack</name></author><author><name sortKey="Opsomer, G" uniqKey="Opsomer G">G Opsomer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="James, Pn" uniqKey="James P">PN James</name></author><author><name sortKey="James, Bk" uniqKey="James B">BK James</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Keith, Pp" uniqKey="Keith P">PP Keith</name></author><author><name sortKey="Andrea, Lf" uniqKey="Andrea L">LF Andrea</name></author><author><name sortKey="Michael, Tc" uniqKey="Michael T">TC Michael</name></author><author><name sortKey="Sheila, Mm" uniqKey="Sheila M">MM Sheila</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Levine, Mm" uniqKey="Levine M">MM Levine</name></author><author><name sortKey="Kaper, Jb" uniqKey="Kaper J">JB Kaper</name></author><author><name sortKey="Black, Re" uniqKey="Black R">RE Black</name></author><author><name sortKey="Clements, Ml" uniqKey="Clements M">ML Clements</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Maddox Hyttel, C" uniqKey="Maddox Hyttel C">C Maddox-Hyttel</name></author><author><name sortKey="Langkjaer, Pb" uniqKey="Langkjaer P">PB Langkjaer</name></author><author><name sortKey="Enemark, Hl" uniqKey="Enemark H">HL Enemark</name></author><author><name sortKey="Vigre, H" uniqKey="Vigre H">H Vigre</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Murinda, Se" uniqKey="Murinda S">SE Murinda</name></author><author><name sortKey="Batson, Sd" uniqKey="Batson S">SD Batson</name></author><author><name sortKey="Nguyen, Lt" uniqKey="Nguyen L">LT Nguyen</name></author><author><name sortKey="Gillespie, Be" uniqKey="Gillespie B">BE Gillespie</name></author><author><name sortKey="Oliver, Sp" uniqKey="Oliver S">SP Oliver</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Naylor, Jm" uniqKey="Naylor J">JM Naylor</name></author><author><name sortKey="Smith, Bp" uniqKey="Smith B">BP Smith</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Qais, Ahm" uniqKey="Qais A">AHM Qais</name></author><author><name sortKey="Maha, Ka" uniqKey="Maha K">KA Maha</name></author><author><name sortKey="Nadra Elwgoud, Mia" uniqKey="Nadra Elwgoud M">MIA Nadra-Elwgoud</name></author><author><name sortKey="Osama, Mee" uniqKey="Osama M">MEE Osama</name></author><author><name sortKey="Attia, Ms" uniqKey="Attia M">MS Attia</name></author><author><name sortKey="Hassan, E" uniqKey="Hassan E">E Hassan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Quinn, Pj" uniqKey="Quinn P">PJ Quinn</name></author><author><name sortKey="Carter, Me" uniqKey="Carter M">ME Carter</name></author><author><name sortKey="Markey, B" uniqKey="Markey B">B Markey</name></author><author><name sortKey="Carter, Rg" uniqKey="Carter R">RG Carter</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Quinn, Pj" uniqKey="Quinn P">PJ Quinn</name></author><author><name sortKey="Markey, Bk" uniqKey="Markey B">BK Markey</name></author><author><name sortKey="Carter, Me" uniqKey="Carter M">ME Carter</name></author><author><name sortKey="Donnelly, Wj" uniqKey="Donnelly W">WJ Donnelly</name></author><author><name sortKey="Leonard, Fc" uniqKey="Leonard F">FC Leonard</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Santin, M" uniqKey="Santin M">M Santin</name></author><author><name sortKey="Trout, Jm" uniqKey="Trout J">JM Trout</name></author><author><name sortKey="Xiao, L" uniqKey="Xiao L">L Xiao</name></author><author><name sortKey="Zhou, L" uniqKey="Zhou L">L Zhou</name></author><author><name sortKey="Greiner, E" uniqKey="Greiner E">E Greiner</name></author><author><name sortKey="Fayer, R" uniqKey="Fayer R">R Fayer</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Uhde, Fl" uniqKey="Uhde F">FL Uhde</name></author><author><name sortKey="Kaufmann, T" uniqKey="Kaufmann T">T Kaufmann</name></author><author><name sortKey="Sager, H" uniqKey="Sager H">H Sager</name></author><author><name sortKey="Albini, S" uniqKey="Albini S">S Albini</name></author><author><name sortKey="Zanoni, R" uniqKey="Zanoni R">R Zanoni</name></author><author><name sortKey="Schelling, E" uniqKey="Schelling E">E Schelling</name></author><author><name sortKey="Meylan, M" uniqKey="Meylan M">M Meylan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Varga, J" uniqKey="Varga J">J Varga</name></author><author><name sortKey="Pesti, L" uniqKey="Pesti L">L Pesti</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Wani, Sa" uniqKey="Wani S">SA Wani</name></author><author><name sortKey="Bhatt, Ma" uniqKey="Bhatt M">MA Bhatt</name></author><author><name sortKey="Samanta, I" uniqKey="Samanta I">I Samanta</name></author><author><name sortKey="Nishikawa, Y" uniqKey="Nishikawa Y">Y Nishikawa</name></author><author><name sortKey="Buchh, As" uniqKey="Buchh A">AS Buchh</name></author></analytic></biblStruct><biblStruct></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Éthiopie</li></country></list><tree><country name="Éthiopie"><noRegion><name sortKey="Gebregiorgis, Ashenafi" sort="Gebregiorgis, Ashenafi" uniqKey="Gebregiorgis A" first="Ashenafi" last="Gebregiorgis">Ashenafi Gebregiorgis</name></noRegion><name sortKey="Tessema, Tesfaye Sisay" sort="Tessema, Tesfaye Sisay" uniqKey="Tessema T" first="Tesfaye Sisay" last="Tessema">Tesfaye Sisay Tessema</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Sante/explor/CovidV2/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001103 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 001103 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Wicri/Sante
|area= CovidV2
|flux= Main
|étape= Exploration
|type= RBID
|clé= PMC:7089229
|texte= Characterization of Escherichia coli isolated from calf diarrhea in and around Kombolcha, South Wollo, Amhara Region, Ethiopia
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:26563273" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a CovidV2
| This area was generated with Dilib version V0.6.33. |  |